STRINGSTRING
Dalk_1227 Dalk_1227 Dalk_4012 Dalk_4012 Dalk_0117 Dalk_0117 Dalk_4127 Dalk_4127 Dalk_3331 Dalk_3331 Dalk_4214 Dalk_4214 Dalk_1188 Dalk_1188 Dalk_0931 Dalk_0931 Dalk_1932 Dalk_1932 Dalk_4745 Dalk_4745 Dalk_2533 Dalk_2533
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Dalk_1227KEGG: pau:PA14_24370 hypothetical protein; IMG reference gene:2503006930; PFAM: Chlorophyllase. (336 aa)    
Predicted Functional Partners:
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
  
 
  0.782
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
    
  0.732
Dalk_4127
KEGG: gbm:Gbem_3777 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; IMG reference gene:2503009873; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain.
   
 
  0.500
Dalk_3331
KEGG: dol:Dole_2568 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; IMG reference gene:2503009061; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1.
    
  0.461
Dalk_4214
TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: dol:Dole_3194 threonyl-tRNA synthetase; IMG reference gene:2503009961; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase.
    
  0.451
Dalk_1188
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gur:Gura_2064 adenylosuccinate lyase; IMG reference gene:2503006890; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase.
    
  0.450
Dalk_0931
KEGG: dol:Dole_1886 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; IMG reference gene:2503006632; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase.
    
  0.442
Dalk_1932
KEGG: dol:Dole_1910 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; IMG reference gene:2503007649; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase.
    
  0.441
Dalk_4745
KEGG: dol:Dole_3028 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; IMG reference gene:2503010502; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut).
    
  0.441
Dalk_2533
Chloride channel core; PFAM: CBS domain containing protein; Chloride channel core; KEGG: rba:RB2982 putative chloride channel; IMG reference gene:2503008254; PFAM: CBS domain; Voltage gated chloride channel.
    
  0.438
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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