STRINGSTRING
Ssed_0593 Ssed_0593 Ssed_0203 Ssed_0203 Ssed_0594 Ssed_0594 Ssed_0596 Ssed_0596 Ssed_0595 Ssed_0595 Ssed_1720 Ssed_1720 Ssed_1401 Ssed_1401 rpoA rpoA Ssed_4339 Ssed_4339 Ssed_0611 Ssed_0611
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ssed_0593KEGG: pau:PA14_24920 putative transcriptional regulator. (348 aa)    
Predicted Functional Partners:
Ssed_0203
KEGG: ppr:PBPRB1682 hypothetical AraC-type transcriptional regulator.
  
     0.773
Ssed_0594
KEGG: maq:Maqu_1346 FAD linked oxidase domain protein.
 
     0.752
Ssed_0596
KEGG: hch:HCH_04623 sugar (pentulose and hexulose) kinase.
 
   
 0.703
Ssed_0595
KEGG: maq:Maqu_1345 FAD dependent oxidoreductase.
 
   
 0.650
Ssed_1720
KEGG: slo:Shew_2383 putative transcriptional regulator, TetR family.
  
    0.497
Ssed_1401
AraC-type DNA-binding domain-containing protein-like protein; KEGG: vvy:VVA1171 hypothetical protein.
 
 
 0.465
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.458
Ssed_4339
KEGG: slo:Shew_0137 transcriptional regulator, TetR family.
  
     0.423
Ssed_0611
KEGG: sbl:Sbal_0518 MaoC domain protein dehydratase.
  
     0.416
Your Current Organism:
Shewanella sediminis
NCBI taxonomy Id: 425104
Other names: S. sediminis HAW-EB3, Shewanella sediminis HAW-EB3, Shewanella sediminis str. HAW-EB3, Shewanella sediminis strain HAW-EB3
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