STRINGSTRING
Daci_1557 Daci_1557 Daci_1558 Daci_1558 Daci_1555 Daci_1555 Daci_1556 Daci_1556 Daci_1554 Daci_1554 Daci_1559 Daci_1559 Daci_0348 Daci_0348 nadX nadX Daci_2887 Daci_2887
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1557PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Daci_1558
PFAM: isochorismatase hydrolase; KEGG: smd:Smed_4075 isochorismatase hydrolase.
 
    0.915
Daci_1555
PFAM: DoxX family protein; KEGG: cko:CKO_00429 hypothetical protein.
 
     0.890
Daci_1556
PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein.
 
     0.885
Daci_1554
PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aav:Aave_0762 protein of unknown function DUF894, DitE.
 
     0.775
Daci_1559
PFAM: Pirin domain protein; KEGG: cvi:CV_1283 hypothetical protein; Belongs to the pirin family.
       0.491
Daci_0348
PFAM: CBS domain containing protein; HPP family protein?; KEGG: rsh:Rsph17029_2488 CBS domain containing protein.
  
     0.427
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
  
     0.420
Daci_2887
PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase.
 
    0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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