STRINGSTRING
ACA72331.1 ACA72331.1 ACA72332.1 ACA72332.1 ACA72330.1 ACA72330.1 ACA75326.1 ACA75326.1 ACA73959.1 ACA73959.1 ACA74959.1 ACA74959.1 ACA74045.1 ACA74045.1 ACA74015.1 ACA74015.1 ACA74793.1 ACA74793.1 ACA74027.1 ACA74027.1 ACA73961.1 ACA73961.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA72331.1anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pau:PA14_32720 probable transmembrane sensor. (309 aa)    
Predicted Functional Partners:
ACA72332.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pae:PA2468 probable sigma-70 factor, ECF subfamily.
 
 
 0.961
ACA72330.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfo:Pfl_5189 TonB-dependent siderophore receptor.
 
  
 0.891
ACA75326.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN5131 RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.837
ACA73959.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_2291 RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.836
ACA74959.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: neu:NE2486 sigma factor, ECF subfamily.
 
 
 0.836
ACA74045.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1814 ferric regulator PfrI; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.823
ACA74015.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN3663 RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.820
ACA74793.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1037 RNA polymerase sigma-70 factor, ECF family.
 
 
 0.819
ACA74027.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: nwi:Nwi_1732 TonB-dependent siderophore receptor.
 
 
 0.794
ACA73961.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_2293 outer membrane ferripyoverdine receptor.
 
 
 0.789
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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