STRINGSTRING
Pden_4348 Pden_4348 Pden_0495 Pden_0495 Pden_1956 Pden_1956 Pden_0047 Pden_0047 Pden_0080 Pden_0080 Pden_3891 Pden_3891 Pden_3982 Pden_3982 Pden_3567 Pden_3567 Pden_4325 Pden_4325 Pden_4210 Pden_4210 Pden_0310 Pden_0310
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
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[Homology]
Score
Pden_4348Integral membrane sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pau:PA14_46370 putative two-component sensor. (561 aa)    
Predicted Functional Partners:
Pden_0495
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rde:RD1_0413 response regulator.
 
 
 0.973
Pden_1956
TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; KEGG: mca:MCA2070 sensory box protein.
  
 
 0.968
Pden_0047
PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rsp:RSP_2280 PAS sensor hybrid histidine kinase.
 
0.953
Pden_0080
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ccr:CC0026 sensory box histidine kinase/response regulator.
 
 
0.931
Pden_3891
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.902
Pden_3982
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: jan:Jann_3131 diguanylate cyclase.
  
 
 0.901
Pden_3567
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: mxa:MXAN_4244 sensor histidine kinase / response regulator.
 
 0.862
Pden_4325
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sil:SPO1953 phosphate regulon transcriptional regulatory protein PhoB.
 
 0.862
Pden_4210
PFAM: response regulator receiver; KEGG: rsp:RSP_0573 response regulator receiver protein.
 
 
 0.852
Pden_0310
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sme:SMb20722 putative two-component response regulator protein.
 
 
 0.845
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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