STRINGSTRING
Pden_0327 Pden_0327 Pden_0326 Pden_0326 Pden_4367 Pden_4367 Pden_1691 Pden_1691 Pden_0304 Pden_0304 Pden_0157 Pden_0157 Pden_1102 Pden_1102 Pden_0218 Pden_0218 Pden_4355 Pden_4355 Pden_1471 Pden_1471 Pden_1058 Pden_1058
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0327Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_48770 putative transcriptional regulator. (324 aa)    
Predicted Functional Partners:
Pden_0326
PFAM: luciferase family protein; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein.
       0.782
Pden_4367
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sme:SMb20683 putative transcriptional regulator, LysR family protein.
  
     0.709
Pden_1691
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: atc:AGR_C_2527 hypothetical protein.
  
     0.693
Pden_0304
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mlo:mll4929 transcriptional regulator.
  
     0.692
Pden_0157
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nwi:Nwi_0252 transcriptional regulatory protein, LysR family.
  
     0.683
Pden_1102
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: gvi:glr2986 LysR family transcriptional regulatory protein.
  
     0.666
Pden_0218
PFAM: regulatory protein, LysR; KEGG: gvi:glr3360 LysR family transcriptional regulatory protein.
  
     0.658
Pden_4355
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: jan:Jann_3249 transcriptional regulator, LysR family.
  
     0.658
Pden_1471
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mes:Meso_3862 transcriptional regulator, LysR family.
  
     0.654
Pden_1058
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_32360 putative LysR-family transcriptional regulator.
  
     0.623
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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