STRINGSTRING
Smal_3623 Smal_3623 Smal_3622 Smal_3622 rpoA rpoA Smal_4025 Smal_4025 rpoC rpoC rpoB rpoB rpoZ rpoZ Smal_3624 Smal_3624 Smal_1673 Smal_1673 lysS lysS Smal_2638 Smal_2638
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_3623PFAM: Glutathione S-transferase domain; KEGG: pau:PA14_49100 probable glutathione S-transferase; Belongs to the GST superfamily. (211 aa)    
Predicted Functional Partners:
Smal_3622
PFAM: Luciferase-like monooxygenase; KEGG: pae:PA1186 hypothetical protein.
  
    0.754
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.659
Smal_4025
PFAM: Glutathione S-transferase domain; KEGG: aha:AHA_2659 glutathione S-transferase family protein.
  
     0.642
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.626
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.533
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.527
Smal_3624
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pap:PSPA7_4195 probable transcriptional regulator.
       0.455
Smal_1673
KEGG: psb:Psyr_0099 hypothetical protein.
   
  0.450
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: xac:XAC1876 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  0.450
Smal_2638
PFAM: NADPH-dependent FMN reductase; KEGG: xac:XAC1476 hypothetical protein.
  
    0.417
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.