STRINGSTRING
ABR71802.1 ABR71802.1 rapA rapA ABR71803.1 ABR71803.1 ABR71805.1 ABR71805.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
ABR71802.1PFAM: protein of unknown function DUF195; KEGG: pau:PA14_51000 hypothetical protein. (437 aa)    
Predicted Functional Partners:
rapA
Helicase domain protein; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
     
 0.601
ABR71803.1
PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: plu:plu4400 hypothetical protein.
       0.544
ABR71805.1
PFAM: pseudouridine synthase; KEGG: pmu:PM1836 ribosomal large subunit pseudouridine synthase A.
       0.472
Your Current Organism:
Marinomonas sp. MWYL1
NCBI taxonomy Id: 400668
Other names: M. sp. MWYL1
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