STRINGSTRING
Daci_5859 Daci_5859 Daci_3662 Daci_3662 Daci_1703 Daci_1703 Daci_1933 Daci_1933 Daci_2896 Daci_2896 Daci_5860 Daci_5860 Daci_1311 Daci_1311 Daci_1889 Daci_1889 Daci_3577 Daci_3577 Daci_5858 Daci_5858 Daci_1331 Daci_1331
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Daci_5859KEGG: pau:PA14_60860 transcriptional regulatory protein NfxB. (188 aa)    
Predicted Functional Partners:
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.589
Daci_1703
Hypothetical protein; KEGG: ppf:Pput_0007 AAA ATPase.
  
     0.578
Daci_1933
KEGG: bbr:BB3510 phage-related hypothetical protein.
  
     0.576
Daci_2896
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor.
  
     0.574
Daci_5860
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2782 transcriptional regulator, LysR family.
 
 
   0.572
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.570
Daci_1889
KEGG: aav:Aave_4457 transcriptional regulator, TetR family.
  
     0.570
Daci_3577
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4098 transporter, putative.
  
     0.562
Daci_5858
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN3125 multidrug efflux RND membrane fusion protein MexC; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.535
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
     0.499
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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