STRINGSTRING
Tgr7_1029 Tgr7_1029 Tgr7_0125 Tgr7_0125 Tgr7_0506 Tgr7_0506 Tgr7_2454 Tgr7_2454 Tgr7_0890 Tgr7_0890 Tgr7_1028 Tgr7_1028 Tgr7_0082 Tgr7_0082 Tgr7_1475 Tgr7_1475 Tgr7_1097 Tgr7_1097 Tgr7_0805 Tgr7_0805 Tgr7_3089 Tgr7_3089
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_1029KEGG: pau:PA14_62530 two-component sensor CbrA. (986 aa)    
Predicted Functional Partners:
Tgr7_0125
Histidine kinase; KEGG: hch:HCH_06299 signal transduction histidine kinase.
  
 
0.995
Tgr7_0506
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: ter:Tery_3412 adenylate/guanylate cyclase.
  
 
 0.995
Tgr7_2454
KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase.
   
 0.962
Tgr7_0890
Signal transduction protein containing a membrane domain an EAL and a GGDEF domain; KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase.
  
 
 0.890
Tgr7_1028
KEGG: mxa:MXAN_5853 sigma-54 dependent DNA-binding response regulator.
 
 
 
 0.867
Tgr7_0082
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: tbd:Tbd_2671 periplasmic sensor hybrid histidine kinase.
  
 
0.837
Tgr7_1475
Response regulator receiver protein; PFAM: Hpt domain protein; KEGG: tbd:Tbd_2671 periplasmic sensor hybrid histidine kinase.
  
 
 0.837
Tgr7_1097
KEGG: ppu:PP_1650 multi-sensor hybrid histidine kinase.
 
 
0.825
Tgr7_0805
Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; KEGG: hha:Hhal_0173 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s).
  
 
 0.807
Tgr7_3089
TIGRFAM: urea amidolyase related protein; urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: dar:Daro_0074 allophanate hydrolase subunit 2.
  
 
 0.776
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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