STRINGSTRING
Oter_0522 Oter_0522 Oter_1920 Oter_1920 Oter_0654 Oter_0654 Oter_3721 Oter_3721 Oter_3504 Oter_3504 Oter_1400 Oter_1400 Oter_4138 Oter_4138 Oter_1543 Oter_1543 Oter_3696 Oter_3696 Oter_3814 Oter_3814 Oter_3813 Oter_3813
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0522PFAM: TonB-dependent receptor; KEGG: pau:PA14_63960 putative uter membrane protein precursor. (817 aa)    
Predicted Functional Partners:
Oter_1920
PFAM: TonB-dependent receptor plug; KEGG: ilo:IL1163 outer membrane protein.
  
    0.746
Oter_0654
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rru:Rru_A1439 putative FecR.
 
 
 0.744
Oter_3721
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative.
 
 
 0.736
Oter_3504
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: ccr:CC_2708 transcriptional regulator, putative.
 
 
 0.723
Oter_1400
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: amr:AM1_3383 TonB-dependent siderophore receptor protein.
  
  
 0.596
Oter_4138
PFAM: Pyrrolo-quinoline quinone; KEGG: sus:Acid_6912 pyrrolo-quinoline quinone.
  
     0.513
Oter_1543
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pde:Pden_4173 TonB-dependent receptor.
  
   
 0.465
Oter_3696
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mca:MCA1957 TonB-dependent receptor, putative.
  
   
 0.445
Oter_3814
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bpt:Bpet4508 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.438
Oter_3813
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rso:RSp1113 probable transmembrane multidrug-efflux system lipoprotein transmembrane; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.429
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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