STRINGSTRING
Smal_3314 Smal_3314 Smal_3315 Smal_3315 Smal_3308 Smal_3308 Smal_3316 Smal_3316 Smal_3312 Smal_3312 Smal_2184 Smal_2184 Smal_2187 Smal_2187 Smal_2469 Smal_2469 Smal_1133 Smal_1133 Smal_1573 Smal_1573 Smal_0939 Smal_0939
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_3314PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pau:PA14_64710 putative extracellular heme-binding protein. (973 aa)    
Predicted Functional Partners:
Smal_3315
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pen:PSEEN0275 FecR-like transmembrane sensor.
 
     0.853
Smal_3308
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
   0.811
Smal_3316
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mrd:Mrad2831_6088 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.790
Smal_3312
PFAM: Haem oxygenase-like; KEGG: azc:AZC_2040 heme oxygenase.
 
     0.776
Smal_2184
KEGG: ppg:PputGB1_1525 conserved hypothetical protein; putative peptide signal.
  
     0.768
Smal_2187
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: eca:ECA1539 putative transmembrane sensor protein.
 
     0.704
Smal_2469
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: reu:Reut_A3217 calcium-binding EF-hand.
  
     0.696
Smal_1133
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: psp:PSPPH_2117 FecR protein superfamily.
 
     0.671
Smal_1573
PFAM: cytochrome P450; KEGG: sen:SACE_2802 putative cytochrome P450 hydroxylase.
  
     0.646
Smal_0939
KEGG: xcb:XC_1364 hypothetical protein.
  
     0.641
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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