STRINGSTRING
Pden_3536 Pden_3536 Pden_3535 Pden_3535 Pden_3573 Pden_3573 Pden_4400 Pden_4400 Pden_2929 Pden_2929 Pden_4265 Pden_4265 Pden_3677 Pden_3677 Pden_3537 Pden_3537 Pden_3538 Pden_3538 Pden_3539 Pden_3539 Pden_3206 Pden_3206
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3536Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_64820 putative transcriptional regulator. (247 aa)    
Predicted Functional Partners:
Pden_3535
PFAM: Glutathione S-transferase, N-terminal domain; KEGG: sil:SPO0270 glutathione S-transferase family protein.
  
    0.775
Pden_3573
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: reu:Reut_C6220 regulatory protein GntR, HTH:GntR, C-terminal.
  
     0.773
Pden_4400
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: rru:Rru_A1414 regulatory protein GntR.
  
  
 0.757
Pden_2929
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: mag:amb0238 transcriptional regulator.
  
  
 0.752
Pden_4265
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfl:PFL_3673 transcriptional regulator, GntR family.
  
  
 0.716
Pden_3677
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_0981 transcriptional regulator, GntR family.
  
     0.661
Pden_3537
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: mes:Meso_3712 short-chain dehydrogenase/reductase SDR.
 
     0.592
Pden_3538
KEGG: rsp:RSP_0635 TRAP-T family transporter, DctQ (4 TMs) subunit.
       0.513
Pden_3539
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_0634 TRAP-T family transporter, DctM (12 TMs) subunit.
       0.501
Pden_3206
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: bxe:Bxe_C0266 transcriptional regulator, GntR family.
  
  
 0.455
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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