STRINGSTRING
Tgr7_2470 Tgr7_2470 Tgr7_2469 Tgr7_2469 Tgr7_2471 Tgr7_2471 rpmB rpmB rnpA rnpA Tgr7_0232 Tgr7_0232 gmk gmk Tgr7_2651 Tgr7_2651 prs prs Tgr7_2472 Tgr7_2472 Tgr7_2738 Tgr7_2738
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_2470KEGG: pau:PA14_68800 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Tgr7_2469
KEGG: csa:Csal_0712 phosphate transporter.
 
  
 0.991
Tgr7_2471
Histidine kinase; KEGG: psa:PST_0426 two-component sensor PhoR.
     
 0.555
rpmB
KEGG: hha:Hhal_2314 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.507
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.476
Tgr7_0232
TIGRFAM: general secretion pathway protein H; KEGG: hha:Hhal_2373 general secretion pathway protein H.
  
     0.465
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.465
Tgr7_2651
KEGG: cja:CJA_2780 phosphate ABC transporter, permease protein.
 
     0.445
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
    0.434
Tgr7_2472
KEGG: psa:PST_0427 DNA-binding response regulator PhoB.
       0.428
Tgr7_2738
PFAM: beta-lactamase domain protein; KEGG: pmy:Pmen_1128 beta-lactamase domain-containing protein.
   
    0.422
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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