STRINGSTRING
DvMF_2130 DvMF_2130 DvMF_1341 DvMF_1341 DvMF_2589 DvMF_2589 DvMF_2771 DvMF_2771
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DvMF_2130PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pau:PA14_69310 LysE family efflux protein. (205 aa)    
Predicted Functional Partners:
DvMF_1341
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_1388 amino acid transporter LysE.
  
    0.783
DvMF_2589
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA).
  
    0.783
DvMF_2771
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dde:Dde_2833 hypothetical protein.
  
    0.783
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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