STRINGSTRING
Pden_3457 Pden_3457 Pden_3456 Pden_3456 Pden_3455 Pden_3455 Pden_3454 Pden_3454 Pden_0836 Pden_0836 Pden_3458 Pden_3458 atpA atpA Pden_3466 Pden_3466 atpG atpG Pden_2088 Pden_2088 rplQ rplQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3457PFAM: FAD dependent oxidoreductase; KEGG: pau:PA14_71210 putative monooxygenase. (423 aa)    
Predicted Functional Partners:
Pden_3456
PFAM: Endoribonuclease L-PSP; KEGG: rde:RD1_4138 endoribonuclease L-PSP family protein, putative.
    0.970
Pden_3455
PFAM: protein of unknown function DUF1028; KEGG: rde:RD1_4139 hypothetical protein.
 
     0.924
Pden_3454
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rde:RD1_4140 transcriptional regulator, LysR family, putative.
 
     0.902
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
 
 0.786
Pden_3458
Acetylornithine deacetylase ArgE, Metallo peptidase, MEROPS family M20A; KEGG: rde:RD1_4143 acetylornithine deacetylase, putative; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein.
 
  
 0.751
atpA
ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.696
Pden_3466
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_2385 transcriptional regulator, LysR family.
  
     0.665
atpG
ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.658
Pden_2088
Endonuclease; KEGG: rfr:Rfer_3072 endonuclease.
    
 
 0.618
rplQ
PFAM: ribosomal protein L17; KEGG: rde:RD1_1438 ribosomal protein L17.
   
   0.586
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.