STRINGSTRING
Pden_0470 Pden_0470 Pden_3432 Pden_3432 Pden_0318 Pden_0318 Pden_4400 Pden_4400 Pden_2929 Pden_2929 Pden_4265 Pden_4265 Pden_1106 Pden_1106 Pden_0467 Pden_0467 Pden_0468 Pden_0468 Pden_0469 Pden_0469 Pden_0466 Pden_0466
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_0470Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_72890 putative transcriptional regulator. (262 aa)    
Predicted Functional Partners:
Pden_3432
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rsp:RSP_3448 transcriptional regulator, GntR-family.
  
     0.774
Pden_0318
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: psb:Psyr_0495 regulatory protein, GntR:bacterial regulatory protein, GntR.
  
     0.757
Pden_4400
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: rru:Rru_A1414 regulatory protein GntR.
  
  
 0.757
Pden_2929
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: mag:amb0238 transcriptional regulator.
  
  
 0.754
Pden_4265
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfl:PFL_3673 transcriptional regulator, GntR family.
  
  
 0.735
Pden_1106
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sil:SPO1912 transcriptional regulator, GntR family.
  
  
 0.721
Pden_0467
Putative spermidine/putrescine-binding protein; KEGG: bmb:BruAb2_0855 hypothetical spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein.
       0.526
Pden_0468
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP_0413 polyamine ABC transporter, permease protein.
       0.526
Pden_0469
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_0565 polyamine ABC transporter, permease protein.
       0.526
Pden_0466
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_4615 spermidine/putrescine ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
       0.509
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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