STRINGSTRING
pcrG pcrG pcrV pcrV pscO pscO pcrD pcrD popB popB pcrH pcrH popN popN popD popD PA1700 PA1700 exsA exsA exsD exsD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcrGRegulator in type III secretion; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). (98 aa)    
Predicted Functional Partners:
pcrV
Type III secretion protein PcrV; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.997
pscO
Translocation protein in type III secretion; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
  
 0.994
pcrD
Type III secretory apparatus protein PcrD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.994
popB
Translocator protein PopB; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.991
pcrH
Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.990
popN
Type III secretion outer membrane protein PopN precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.989
popD
Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.989
PA1700
Conserved hypothetical protein in type III secretion; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
    0.956
exsA
Transcriptional regulator ExsA; Appears to be required for induction of exoenzyme S synthesis above a low basal level.
  
  
 0.950
exsD
ExsD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.943
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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