pscG protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pscG

Type III export protein PscG; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels. (115 aa)

Predicted Functional Partners:

pscE

0.999

pscF

0.999

pscJ

0.987

pscL

0.987

pscC

0.982

pscH

0.974

pscI

0.971

pscB

0.967

pcrH

0.966

popD

0.956

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pcrH	popD	PA1707	PA1709	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.998
pcrH	pscB	PA1707	PA1715	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export apparatus protein; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.882
pcrH	pscC	PA1707	PA1716	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.978
pcrH	pscE	PA1707	PA1718	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscE; Prevents premature polymerization of PscF, along with PscG, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels. Belongs to the YscE family.	0.960
pcrH	pscF	PA1707	PA1719	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscF; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages.	0.946
pcrH	pscG	PA1707	PA1720	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscG; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels.	0.966
pcrH	pscH	PA1707	PA1721	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.854
pcrH	pscI	PA1707	PA1722	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscI; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.965
pcrH	pscJ	PA1707	PA1723	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.989
pcrH	pscL	PA1707	PA1725	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.958
popD	pcrH	PA1709	PA1707	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Regulatory protein PcrH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.998
popD	pscB	PA1709	PA1715	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export apparatus protein; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.773
popD	pscC	PA1709	PA1716	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.937
popD	pscE	PA1709	PA1718	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscE; Prevents premature polymerization of PscF, along with PscG, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels. Belongs to the YscE family.	0.967
popD	pscF	PA1709	PA1719	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscF; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages.	0.977
popD	pscG	PA1709	PA1720	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscG; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels.	0.956
popD	pscH	PA1709	PA1721	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.874
popD	pscI	PA1709	PA1722	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscI; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.943
popD	pscJ	PA1709	PA1723	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.925
popD	pscL	PA1709	PA1725	Translocator outer membrane protein PopD precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Type III export protein PscL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.858

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About