Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA1821 | fimL | PA1821 | PA1822 | Probable enoyl-CoA hydratase/isomerase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the enoyl-CoA hydratase/isomerase family. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.788 |
| PA1821 | nhaB | PA1821 | PA1820 | Probable enoyl-CoA hydratase/isomerase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the enoyl-CoA hydratase/isomerase family. | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | 0.478 |
| PA5529 | bpt | PA5529 | PA2618 | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.691 |
| PA5529 | nhaB | PA5529 | PA1820 | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | 0.523 |
| PA5529 | nhaP2 | PA5529 | PA5021 | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable sodium/hydrogen antiporter; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.815 |
| PA5529 | nqrA | PA5529 | PA2999 | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq1; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. | 0.502 |
| bpt | PA5529 | PA2618 | PA5529 | Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.691 |
| bpt | nhaB | PA2618 | PA1820 | Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | 0.493 |
| bpt | nqrA | PA2618 | PA2999 | Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq1; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. | 0.416 |
| fimL | PA1821 | PA1822 | PA1821 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable enoyl-CoA hydratase/isomerase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the enoyl-CoA hydratase/isomerase family. | 0.788 |
| fimL | nhaB | PA1822 | PA1820 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | 0.480 |
| kefB | nhaB | PA1207 | PA1820 | Glutathione-regulated potassium-efflux system protein KefB; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | 0.518 |
| kefB | nhaP2 | PA1207 | PA5021 | Glutathione-regulated potassium-efflux system protein KefB; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | Probable sodium/hydrogen antiporter; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.509 |
| nhaB | PA1821 | PA1820 | PA1821 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Probable enoyl-CoA hydratase/isomerase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the enoyl-CoA hydratase/isomerase family. | 0.478 |
| nhaB | PA5529 | PA1820 | PA5529 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Probable sodium/proton antiporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.523 |
| nhaB | bpt | PA1820 | PA2618 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Hypothetical protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | 0.493 |
| nhaB | fimL | PA1820 | PA1822 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.480 |
| nhaB | kefB | PA1820 | PA1207 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Glutathione-regulated potassium-efflux system protein KefB; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.518 |
| nhaB | nhaP | PA1820 | PA3887 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Na+/H+ antiporter NhaP; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Has also weak Li(+)/H(+) antiport activity. Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. | 0.889 |
| nhaB | nhaP2 | PA1820 | PA5021 | Sodium/proton antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium. Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. | Probable sodium/hydrogen antiporter; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.893 |
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