Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0679 | xcpP | PA0679 | PA3104 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.900 |
| PA0679 | xphA | PA0679 | PA1867 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.901 |
| PA0685 | xcpP | PA0685 | PA3104 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.674 |
| PA0685 | xcpX | PA0685 | PA3097 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | General secretion pathway protein K; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Belongs to the GSP K family. | 0.798 |
| PA0685 | xphA | PA0685 | PA1867 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.674 |
| PA1382 | xcpP | PA1382 | PA3104 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.674 |
| PA1382 | xcpX | PA1382 | PA3097 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | General secretion pathway protein K; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Belongs to the GSP K family. | 0.401 |
| PA1382 | xphA | PA1382 | PA1867 | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.674 |
| PA2633 | xcpP | PA2633 | PA3104 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.688 |
| PA2633 | xphA | PA2633 | PA1867 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.640 |
| lap | xcpP | PA2939 | PA3104 | Probable aminopeptidase; A secreted aminopeptidase. Acts on free N-terminal amino groups with a very strong preference for Leu- followed by Met- and Ala-, and no activity on Glu- or Gly- peptides (an exhaustive analysis was not performed). Both the AP56 and AP28 forms have activity. | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.458 |
| lap | xcpQ | PA2939 | PA3105 | Probable aminopeptidase; A secreted aminopeptidase. Acts on free N-terminal amino groups with a very strong preference for Leu- followed by Met- and Ala-, and no activity on Glu- or Gly- peptides (an exhaustive analysis was not performed). Both the AP56 and AP28 forms have activity. | General secretion pathway protein D; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (Probable). This subunit forms the outer membrane channel (By similarity). Among its substrates are PrpL, elastase LasB, chitin binding protein D (CbpD), aminopeptidase PaAP, and metalloprotease ImpA. Belongs to the bacterial secretin family. GSP D subfamily. | 0.695 |
| lap | xphA | PA2939 | PA1867 | Probable aminopeptidase; A secreted aminopeptidase. Acts on free N-terminal amino groups with a very strong preference for Leu- followed by Met- and Ala-, and no activity on Glu- or Gly- peptides (an exhaustive analysis was not performed). Both the AP56 and AP28 forms have activity. | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.588 |
| lap | xqhA | PA2939 | PA1868 | Probable aminopeptidase; A secreted aminopeptidase. Acts on free N-terminal amino groups with a very strong preference for Leu- followed by Met- and Ala-, and no activity on Glu- or Gly- peptides (an exhaustive analysis was not performed). Both the AP56 and AP28 forms have activity. | Secretion protein XqhA; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.700 |
| pscC | xcpP | PA1716 | PA3104 | Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | 0.717 |
| pscC | xphA | PA1716 | PA1867 | Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | XphA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.676 |
| xcpP | PA0679 | PA3104 | PA0679 | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.900 |
| xcpP | PA0685 | PA3104 | PA0685 | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.674 |
| xcpP | PA1382 | PA3104 | PA1382 | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | Probable type II secretion system protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.674 |
| xcpP | PA2633 | PA3104 | PA2633 | Secretion protein XcpP; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.688 |
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