Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA2489 | PA2511 | PA2489 | PA2511 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.414 |
| PA2511 | PA2489 | PA2511 | PA2489 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.414 |
| PA2511 | PA2682 | PA2511 | PA2682 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.821 |
| PA2511 | PA5342 | PA2511 | PA5342 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.440 |
| PA2511 | antA | PA2511 | PA2512 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.906 |
| PA2511 | antB | PA2511 | PA2513 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.902 |
| PA2511 | antC | PA2511 | PA2514 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.895 |
| PA2511 | catA | PA2511 | PA2507 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Catechol 1,2-dioxygenase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.634 |
| PA2511 | catB | PA2511 | PA2509 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Muconate cycloisomerase I; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.457 |
| PA2511 | catC | PA2511 | PA2508 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Muconolactone delta-isomerase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.741 |
| PA2682 | PA2511 | PA2682 | PA2511 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.821 |
| PA2682 | antA | PA2682 | PA2512 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.869 |
| PA2682 | antB | PA2682 | PA2513 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.835 |
| PA2682 | antC | PA2682 | PA2514 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.891 |
| PA2682 | catA | PA2682 | PA2507 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Catechol 1,2-dioxygenase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.898 |
| PA2682 | catB | PA2682 | PA2509 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Muconate cycloisomerase I; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.954 |
| PA2682 | catC | PA2682 | PA2508 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Muconolactone delta-isomerase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.946 |
| PA5342 | PA2511 | PA5342 | PA2511 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.440 |
| antA | PA2511 | PA2512 | PA2511 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.906 |
| antA | PA2682 | PA2512 | PA2682 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.869 |
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