STRINGSTRING
pelE pelE pelG pelG pelF pelF pelD pelD pelC pelC pelA pelA pelB pelB alaS alaS PA5566 PA5566 alg8 alg8 rpoA rpoA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelEPelE; Class 1: Function experimentally demonstrated in P. aeruginosa. (329 aa)    
Predicted Functional Partners:
pelG
PelG; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
  
 0.996
pelF
PelF; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
 
 0.995
pelD
PelD; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
  
 0.995
pelC
PelC; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
  
 0.994
pelA
PelA; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
  
 0.991
pelB
PelB; Class 1: Function experimentally demonstrated in P. aeruginosa.
 
  
 0.990
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.804
PA5566
Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
   
 0.804
alg8
Alginate biosynthesis protein Alg8; Processive enzyme that polymerizes GDP-mannuronic acid. Belongs to the glycosyltransferase 2 family.
 
 
 0.760
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.725
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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