Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| nirF | nirN | PA0516 | PA0509 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.991 |
| nirF | nirS | PA0516 | PA0519 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Nitrite reductase precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.983 |
| nirF | norB | PA0516 | PA0524 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Nitric-oxide reductase subunit B; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity). | 0.986 |
| nirF | norC | PA0516 | PA0523 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Nitric-oxide reductase subunit C; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). | 0.956 |
| nirF | nosD | PA0516 | PA3393 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | NosD protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.954 |
| nirF | nosF | PA0516 | PA3394 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | NosF protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.852 |
| nirF | nosL | PA0516 | PA3396 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | NosL protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.587 |
| nirF | nosR | PA0516 | PA3391 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Regulatory protein NosR; Transcriptional activator of the nitrous-oxide reductase gene NosZ. | 0.950 |
| nirF | nosY | PA0516 | PA3395 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | NosY protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.834 |
| nirF | nosZ | PA0516 | PA3392 | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | Nitrous-oxide reductase precursor; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family. | 0.981 |
| nirN | nirF | PA0509 | PA0516 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Heme d1 biosynthesis protein NirF; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17. | 0.991 |
| nirN | nirS | PA0509 | PA0519 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitrite reductase precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.990 |
| nirN | norB | PA0509 | PA0524 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitric-oxide reductase subunit B; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). NorB is the catalytic subunit of the enzyme complex. Shows proton pump activity across the membrane in denitrifying bacterial cells. The mononitrogen reduction is probably coupled to electron transport phosphorylation (By similarity). | 0.986 |
| nirN | norC | PA0509 | PA0523 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitric-oxide reductase subunit C; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). | 0.947 |
| nirN | nosD | PA0509 | PA3393 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosD protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.961 |
| nirN | nosF | PA0509 | PA3394 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosF protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.879 |
| nirN | nosL | PA0509 | PA3396 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosL protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.780 |
| nirN | nosR | PA0509 | PA3391 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Regulatory protein NosR; Transcriptional activator of the nitrous-oxide reductase gene NosZ. | 0.960 |
| nirN | nosY | PA0509 | PA3395 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | NosY protein; Required for the assembly of the copper chromophores of nitrous oxide reductase. Could be part of the ABC transporter complex NosDFY. | 0.850 |
| nirN | nosZ | PA0509 | PA3392 | Probable c-type cytochrome; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Nitrous-oxide reductase precursor; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family. | 0.978 |
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