Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA1487 | arcC | PA1487 | PA5173 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.432 |
| PA1487 | glpD | PA1487 | PA3584 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.969 |
| PA1487 | glpF | PA1487 | PA3581 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Glycerol uptake facilitator protein; Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane. | 0.844 |
| PA1487 | glpK | PA1487 | PA3582 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.919 |
| PA1487 | glpK1 | PA1487 | PA3579 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Probable carbohydrate kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.918 |
| PA1487 | gmk | PA1487 | PA5336 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.492 |
| PA1487 | pta | PA1487 | PA0835 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Phosphate acetyltransferase; Involved in acetate metabolism. In combination with LdhA and AckA, allows fermentation of pyruvate, enhancing long-term survival under anaerobic conditions; In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family. | 0.749 |
| PA1487 | tpiA | PA1487 | PA4748 | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.526 |
| arcC | PA1487 | PA5173 | PA1487 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | 0.432 |
| arcC | glpF | PA5173 | PA3581 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glycerol uptake facilitator protein; Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane. | 0.905 |
| arcC | glpK1 | PA5173 | PA3579 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable carbohydrate kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.432 |
| arcC | gmk | PA5173 | PA5336 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.921 |
| arcC | pta | PA5173 | PA0835 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Phosphate acetyltransferase; Involved in acetate metabolism. In combination with LdhA and AckA, allows fermentation of pyruvate, enhancing long-term survival under anaerobic conditions; In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family. | 0.943 |
| arcC | tpiA | PA5173 | PA4748 | Carbamate kinase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.920 |
| glpD | PA1487 | PA3584 | PA1487 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable carbohydrate kinase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the FGGY kinase family. | 0.969 |
| glpD | glpF | PA3584 | PA3581 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glycerol uptake facilitator protein; Glycerol enters the cell via the glycerol diffusion facilitator protein. This membrane protein facilitates the movement of glycerol across the cytoplasmic membrane. | 0.995 |
| glpD | glpK | PA3584 | PA3582 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.998 |
| glpD | glpK1 | PA3584 | PA3579 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable carbohydrate kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.991 |
| glpD | glpR | PA3584 | PA3583 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glycerol-3-phosphate regulon repressor; Repressor of the glycerol-3-phosphate regulon. | 0.878 |
| glpD | glpT | PA3584 | PA5235 | Glycerol-3-phosphate dehydrogenase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Glycerol-3-phosphate transporter; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.777 |
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