STRINGSTRING
PA3606 PA3606 PA1424 PA1424 potB potB PA0060 PA0060 potA potA ccoQ1 ccoQ1 potC potC PA0039 PA0039 hemL hemL argS argS PA5209 PA5209
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PA3606Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). (238 aa)    
Predicted Functional Partners:
PA1424
Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
  
0.474
potB
Polyamine transport protein PotB; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
    0.456
PA0060
Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
     0.455
potA
Polyamine transport protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
    0.448
ccoQ1
Cytochrome c oxidase, cbb3-type, CcoQ subunit; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa.
  
     0.447
potC
Polyamine transport protein PotC; Product name confidence: Class 2 (High similarity to functionally studied protein).
       0.445
PA0039
Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
     0.414
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
      
 0.410
argS
arginyl-tRNA synthetase; Product name confidence: Class 2 (High similarity to functionally studied protein).
      
 0.410
PA5209
Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences).
  
     0.410
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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