Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA2475 | PA3327 | PA2475 | PA3327 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.962 |
| PA2475 | PA3331 | PA2475 | PA3331 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Cytochrome P450; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the cytochrome P450 family. | 0.433 |
| PA2475 | PA3679 | PA2475 | PA3679 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences); Belongs to the cytochrome P450 family. | 0.941 |
| PA2475 | pchF | PA2475 | PA4225 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Pyochelin synthetase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.856 |
| PA2475 | polA | PA2475 | PA5493 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity. | 0.965 |
| PA2475 | pvdD | PA2475 | PA2399 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Pyoverdine synthetase D; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.884 |
| PA2475 | pvdJ | PA2475 | PA2400 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | PvdJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.891 |
| PA2475 | pvdL | PA2475 | PA2424 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.971 |
| PA2475 | rhlB | PA2475 | PA3478 | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | Rhamnosyltransferase chain B; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.592 |
| PA3327 | PA2475 | PA3327 | PA2475 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | 0.962 |
| PA3327 | PA3331 | PA3327 | PA3331 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Cytochrome P450; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the cytochrome P450 family. | 0.999 |
| PA3327 | PA3679 | PA3327 | PA3679 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences); Belongs to the cytochrome P450 family. | 0.960 |
| PA3327 | pchF | PA3327 | PA4225 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Pyochelin synthetase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.981 |
| PA3327 | polA | PA3327 | PA5493 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity. | 0.697 |
| PA3327 | pvdD | PA3327 | PA2399 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Pyoverdine synthetase D; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.980 |
| PA3327 | pvdJ | PA3327 | PA2400 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PvdJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.994 |
| PA3327 | pvdL | PA3327 | PA2424 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PvdL; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.998 |
| PA3327 | rhlB | PA3327 | PA3478 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Rhamnosyltransferase chain B; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.706 |
| PA3331 | PA2475 | PA3331 | PA2475 | Cytochrome P450; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the cytochrome P450 family. | Probable cytochrome P450; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the cytochrome P450 family. | 0.433 |
| PA3331 | PA3327 | PA3331 | PA3327 | Cytochrome P450; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the cytochrome P450 family. | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.999 |
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