Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA1888 | PA3859 | PA1888 | PA3859 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.517 |
| PA2105 | PA3859 | PA2105 | PA3859 | Probable acetyltransferase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.767 |
| PA2105 | pmbA | PA2105 | PA4472 | Probable acetyltransferase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PmbA protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.779 |
| PA2218 | PA3859 | PA2218 | PA3859 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences); To E.coli YcjY. | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.521 |
| PA2411 | PA3859 | PA2411 | PA3859 | Probable thioesterase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.589 |
| PA3695 | PA3859 | PA3695 | PA3859 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.524 |
| PA3829 | PA3859 | PA3829 | PA3859 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.521 |
| PA3859 | PA1888 | PA3859 | PA1888 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.517 |
| PA3859 | PA2105 | PA3859 | PA2105 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable acetyltransferase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.767 |
| PA3859 | PA2218 | PA3859 | PA2218 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences); To E.coli YcjY. | 0.521 |
| PA3859 | PA2411 | PA3859 | PA2411 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Probable thioesterase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.589 |
| PA3859 | PA3695 | PA3859 | PA3695 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.524 |
| PA3859 | PA3829 | PA3859 | PA3829 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.521 |
| PA3859 | bioD | PA3859 | PA0504 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.512 |
| PA3859 | pdxH | PA3859 | PA1049 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Pyridoxine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.609 |
| PA3859 | pmbA | PA3859 | PA4472 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | PmbA protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.802 |
| PA3859 | tmk | PA3859 | PA2962 | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.606 |
| bioD | PA3859 | PA0504 | PA3859 | Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.512 |
| pdxH | PA3859 | PA1049 | PA3859 | Pyridoxine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Carboxylesterase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.609 |
| pmbA | PA2105 | PA4472 | PA2105 | PmbA protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable acetyltransferase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.779 |
page 1 of 2