STRINGSTRING
cupB6 cupB6 cupB5 cupB5 cupB4 cupB4 cupB3 cupB3 cupB1 cupB1 cupB2 cupB2 cupA4 cupA4 cupA1 cupA1 cupC2 cupC2 cupA2 cupA2 cupA5 cupA5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cupB6Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein). (381 aa)    
Predicted Functional Partners:
cupB5
Adhesive protein CupB5; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
  
 0.978
cupB4
Chaperone CupB4; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
 
 0.960
cupB3
Usher CupB3; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
 
 0.921
cupB1
Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
  
 0.917
cupB2
Chaperone CupB2; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
 
 0.888
cupA4
Fimbrial subunit CupA4; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.830
cupA1
Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
   
  
 0.704
cupC2
Chaperone CupC2; Product name confidence: Class 2 (High similarity to functionally studied protein).
  
 
 0.632
cupA2
Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
 
 0.632
cupA5
Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
 
 0.615
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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