cupB3 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cupB3

Usher CupB3; Product name confidence: Class 2 (High similarity to functionally studied protein). (844 aa)

Predicted Functional Partners:

cupB4

0.996

cupB2

0.993

cupC2

0.968

cupA2

0.966

cupB1

0.966

cupB5

0.964

cupA5

0.929

cupA1

0.924

cupB6

0.921

PA0499

0.897

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PA0499	cupA1	PA0499	PA2128	Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.853
PA0499	cupB1	PA0499	PA4086	Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).	Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.609
PA0499	cupB3	PA0499	PA4084	Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).	Usher CupB3; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.897
PA0499	cupB6	PA0499	PA4081	Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).	Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.413
cupA1	PA0499	PA2128	PA0499	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Probable pili assembly chaperone; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene).	0.853
cupA1	cupA2	PA2128	PA2129	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.982
cupA1	cupA5	PA2128	PA2132	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.988
cupA1	cupB1	PA2128	PA4086	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.729
cupA1	cupB2	PA2128	PA4085	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupB2; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.906
cupA1	cupB3	PA2128	PA4084	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Usher CupB3; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.924
cupA1	cupB4	PA2128	PA4083	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupB4; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.923
cupA1	cupB6	PA2128	PA4081	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.704
cupA1	cupC2	PA2128	PA0993	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupC2; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.894
cupA2	cupA1	PA2129	PA2128	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.982
cupA2	cupA5	PA2129	PA2132	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.873
cupA2	cupB1	PA2129	PA4086	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Probable fimbrial subunit CupB1; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.770
cupA2	cupB3	PA2129	PA4084	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Usher CupB3; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.966
cupA2	cupB6	PA2129	PA4081	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Fimbrial subunit CupB6; Product name confidence: Class 2 (High similarity to functionally studied protein).	0.632
cupA5	cupA1	PA2132	PA2128	Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Fimbrial subunit CupA1; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.988
cupA5	cupA2	PA2132	PA2129	Chaperone CupA5; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	Chaperone CupA2; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).	0.873

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About