Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0120 | PA4114 | PA0120 | PA4114 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.883 |
| PA0120 | ribB | PA0120 | PA4054 | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. | 0.769 |
| PA0421 | PA4114 | PA0421 | PA4114 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.900 |
| PA0830 | PA1416 | PA0830 | PA1416 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.806 |
| PA0830 | PA4114 | PA0830 | PA4114 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.768 |
| PA1416 | PA0830 | PA1416 | PA0830 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.806 |
| PA1416 | PA4114 | PA1416 | PA4114 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.767 |
| PA4114 | PA0120 | PA4114 | PA0120 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable transcriptional regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.883 |
| PA4114 | PA0421 | PA4114 | PA0421 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.900 |
| PA4114 | PA0830 | PA4114 | PA0830 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.768 |
| PA4114 | PA1416 | PA4114 | PA1416 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.767 |
| PA4114 | aguB | PA4114 | PA0293 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | N-carbamoylputrescine amidohydrolase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.900 |
| PA4114 | ribB | PA4114 | PA4054 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. | 0.846 |
| PA4114 | speC | PA4114 | PA4519 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Ornithine decarboxylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.907 |
| PA4114 | speE | PA4114 | PA1687 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.900 |
| PA4114 | speE2 | PA4114 | PA4774 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Hypothetical protein; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.900 |
| PA4114 | spuC | PA4114 | PA0299 | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Putrescine aminotransferase; Involved in the putrescine catabolism. Catalyzes the transfer of the amino group from putrescine to pyruvate to yield 4-aminobutanal and alanine; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.900 |
| aguB | PA4114 | PA0293 | PA4114 | N-carbamoylputrescine amidohydrolase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Spermidine acetyltransferase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.900 |
| aguB | speC | PA0293 | PA4519 | N-carbamoylputrescine amidohydrolase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Ornithine decarboxylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.988 |
| aguB | speE | PA0293 | PA1687 | N-carbamoylputrescine amidohydrolase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.980 |
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