Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0041 | PA1405 | PA0041 | PA1405 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.703 |
| PA0041 | PA4118 | PA0041 | PA4118 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.718 |
| PA0041 | PA4437 | PA0041 | PA4437 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.597 |
| PA0041 | pslE | PA0041 | PA2235 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslE; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.745 |
| PA0041 | pslF | PA0041 | PA2236 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslF; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.679 |
| PA0041 | pslG | PA0041 | PA2237 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslG; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.743 |
| PA0041 | pslJ | PA0041 | PA2240 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslJ; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.759 |
| PA0041 | waaL | PA0041 | PA4999 | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | O-antigen ligase, WaaL; Potential O-antigen polymerase, which may be involved in the synthesis of LPS. | 0.712 |
| PA1405 | PA0041 | PA1405 | PA0041 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable hemagglutinin; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.703 |
| PA1405 | PA2462 | PA1405 | PA2462 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.666 |
| PA1405 | PA4118 | PA1405 | PA4118 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.581 |
| PA1405 | PA4437 | PA1405 | PA4437 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.521 |
| PA1405 | pslE | PA1405 | PA2235 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslE; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.609 |
| PA1405 | pslF | PA1405 | PA2236 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslF; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.645 |
| PA1405 | pslG | PA1405 | PA2237 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslG; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa; Belongs to the glycosyl hydrolase 5 (cellulase A) family. | 0.652 |
| PA1405 | pslJ | PA1405 | PA2240 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | PslJ; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.697 |
| PA1405 | waaL | PA1405 | PA4999 | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | O-antigen ligase, WaaL; Potential O-antigen polymerase, which may be involved in the synthesis of LPS. | 0.700 |
| PA2462 | PA1405 | PA2462 | PA1405 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable helicase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.666 |
| PA2462 | PA4118 | PA2462 | PA4118 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.677 |
| PA2462 | PA4437 | PA2462 | PA4437 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.544 |
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