Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA4136 | PA4571 | PA4136 | PA4571 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.692 |
| PA4136 | PA4779 | PA4136 | PA4779 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.820 |
| PA4136 | bauR | PA4136 | PA0133 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | 0.691 |
| PA4136 | mltB1 | PA4136 | PA4444 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Soluble and membrane-bound lytic transglycosylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.691 |
| PA4571 | PA4136 | PA4571 | PA4136 | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.692 |
| PA4571 | PA4779 | PA4571 | PA4779 | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.769 |
| PA4571 | bauR | PA4571 | PA0133 | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | 0.587 |
| PA4571 | mltB1 | PA4571 | PA4444 | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Soluble and membrane-bound lytic transglycosylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.588 |
| PA4779 | PA4136 | PA4779 | PA4136 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.820 |
| PA4779 | PA4571 | PA4779 | PA4571 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.769 |
| PA4779 | bauR | PA4779 | PA0133 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | 0.772 |
| PA4779 | mltB1 | PA4779 | PA4444 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Soluble and membrane-bound lytic transglycosylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.769 |
| PA5133 | mltB1 | PA5133 | PA4444 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Soluble and membrane-bound lytic transglycosylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.589 |
| PA5133 | mltD | PA5133 | PA1812 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Membrane-bound lytic murein transglycosylase D precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.406 |
| PA5133 | tam | PA5133 | PA2564 | Conserved hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate. | 0.885 |
| PA5198 | mltB1 | PA5198 | PA4444 | LD-carboxypeptidase; Releases the terminal D-alanine residue from the cytoplasmic disaccharide-tetrapeptide GlcNAc-MurNAc-L-Ala-gamma-D-Glu-meso-Dap-D- Ala, which is a murein turnover product. Probably also act on free tetrapetide. May be involved in murein recycling. | Soluble and membrane-bound lytic transglycosylase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.592 |
| PA5198 | nagZ | PA5198 | PA3005 | LD-carboxypeptidase; Releases the terminal D-alanine residue from the cytoplasmic disaccharide-tetrapeptide GlcNAc-MurNAc-L-Ala-gamma-D-Glu-meso-Dap-D- Ala, which is a murein turnover product. Probably also act on free tetrapetide. May be involved in murein recycling. | beta-N-acetyl-D-glucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides (By similarity). Contributes to intrinsic fosfomycin resistance in P.aeruginosa ; Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. | 0.404 |
| bauR | PA4136 | PA0133 | PA4136 | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.691 |
| bauR | PA4571 | PA0133 | PA4571 | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | Probable cytochrome c; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.587 |
| bauR | PA4779 | PA0133 | PA4779 | Probable transcriptional regulator; Involved in the degradation of beta-alanine. BauR activates the transcription of the bauABCD operon; Belongs to the LysR transcriptional regulatory family. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.772 |
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