Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA4331 | PA5236 | PA4331 | PA5236 | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.570 |
| PA4331 | antC | PA4331 | PA2514 | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.577 |
| PA4331 | fadH2 | PA4331 | PA4814 | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.919 |
| PA4331 | xylZ | PA4331 | PA2516 | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Toluate 1,2-dioxygenase electron transfer component; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.562 |
| PA4911 | fadH2 | PA4911 | PA4814 | Probable permease of ABC branched-chain amino acid transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the binding-protein-dependent transport system permease family. | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.850 |
| PA4911 | gltB | PA4911 | PA5036 | Probable permease of ABC branched-chain amino acid transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the binding-protein-dependent transport system permease family. | Glutamate synthase large chain precursor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.528 |
| PA5236 | PA4331 | PA5236 | PA4331 | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.570 |
| PA5236 | antC | PA5236 | PA2514 | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.563 |
| PA5236 | fadH2 | PA5236 | PA4814 | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.919 |
| PA5236 | xylZ | PA5236 | PA2516 | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Toluate 1,2-dioxygenase electron transfer component; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.549 |
| PA5401 | etfA | PA5401 | PA2951 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Electron transfer flavoprotein alpha-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.933 |
| PA5401 | fadH2 | PA5401 | PA4814 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.861 |
| antC | PA4331 | PA2514 | PA4331 | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable ferredoxin reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.577 |
| antC | PA5236 | PA2514 | PA5236 | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable aromatic hydrocarbon reductase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.563 |
| antC | fadH2 | PA2514 | PA4814 | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.919 |
| antC | xylZ | PA2514 | PA2516 | Anthranilate dioxygenase reductase; Product name confidence: Class 2 (High similarity to functionally studied protein). | Toluate 1,2-dioxygenase electron transfer component; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.480 |
| etfA | PA5401 | PA2951 | PA5401 | Electron transfer flavoprotein alpha-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.933 |
| etfA | etfB | PA2951 | PA2952 | Electron transfer flavoprotein alpha-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | Electron transfer flavoprotein beta-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.999 |
| etfA | fadH2 | PA2951 | PA4814 | Electron transfer flavoprotein alpha-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 2,4-dienoyl-CoA reductase FadH2; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.825 |
| etfB | etfA | PA2952 | PA2951 | Electron transfer flavoprotein beta-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | Electron transfer flavoprotein alpha-subunit; The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity). | 0.999 |
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