Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0238 | PA4903 | PA0238 | PA4903 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.444 |
| PA2262 | PA4903 | PA2262 | PA4903 | Probable 2-ketogluconate transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.534 |
| PA4187 | PA4903 | PA4187 | PA4903 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.600 |
| PA4903 | PA0238 | PA4903 | PA0238 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.444 |
| PA4903 | PA2262 | PA4903 | PA2262 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable 2-ketogluconate transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.534 |
| PA4903 | PA4187 | PA4903 | PA4187 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.600 |
| PA4903 | antA | PA4903 | PA2512 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.458 |
| PA4903 | antB | PA4903 | PA2513 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.497 |
| PA4903 | catC | PA4903 | PA2508 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Muconolactone delta-isomerase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.517 |
| PA4903 | vanA | PA4903 | PA4904 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Vanillate O-demethylase oxygenase subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.507 |
| PA4903 | xylL | PA4903 | PA2515 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Cis-1,2-dihydroxycyclohexa-3,4-diene carboxylate dehydrogenase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.495 |
| PA4903 | xylX | PA4903 | PA2518 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Toluate 1,2-dioxygenase alpha subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.525 |
| PA4903 | xylY | PA4903 | PA2517 | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Toluate 1,2-dioxygenase beta subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.517 |
| antA | PA4903 | PA2512 | PA4903 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.458 |
| antA | antB | PA2512 | PA2513 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.999 |
| antA | catC | PA2512 | PA2508 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Muconolactone delta-isomerase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.989 |
| antA | xylL | PA2512 | PA2515 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Cis-1,2-dihydroxycyclohexa-3,4-diene carboxylate dehydrogenase; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.865 |
| antA | xylY | PA2512 | PA2517 | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Toluate 1,2-dioxygenase beta subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.955 |
| antB | PA4903 | PA2513 | PA4903 | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable major facilitator superfamily (MFS) transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.497 |
| antB | antA | PA2513 | PA2512 | Anthranilate dioxygenase small subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | Anthranilate dioxygenase large subunit; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.999 |
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