Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0314 | PA1256 | PA0314 | PA1256 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.759 |
| PA0314 | PA1339 | PA0314 | PA1339 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.790 |
| PA0314 | PA5152 | PA0314 | PA5152 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Probable ATP-binding component of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.726 |
| PA0314 | PA5154 | PA0314 | PA5154 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Probable permease of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.871 |
| PA0314 | PA5155 | PA0314 | PA5155 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter membrane protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.904 |
| PA0314 | aotP | PA0314 | PA0892 | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | Arginine/ornithine transport protein AotP; Part of the arginine-inducible binding-protein-dependent transport system for arginine and ornithine. Probably responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. | 0.745 |
| PA1256 | PA0314 | PA1256 | PA0314 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | 0.759 |
| PA1256 | PA1260 | PA1256 | PA1260 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.999 |
| PA1256 | PA5076 | PA1256 | PA5076 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable binding protein component of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the bacterial solute-binding protein 3 family. | 0.778 |
| PA1256 | PA5153 | PA1256 | PA5153 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Putative lysine/arginine/ornithine/histidine/octopine transport system substrate-binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa; Belongs to the bacterial solute-binding protein 3 family. | 0.879 |
| PA1256 | PA5154 | PA1256 | PA5154 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable permease of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.768 |
| PA1256 | PA5155 | PA1256 | PA5155 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter membrane protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.904 |
| PA1256 | aotJ | PA1256 | PA0888 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Arginine/ornithine binding protein AotJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the bacterial solute-binding protein 3 family. | 0.822 |
| PA1260 | PA1256 | PA1260 | PA1256 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.999 |
| PA1260 | PA1339 | PA1260 | PA1339 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.814 |
| PA1260 | PA5152 | PA1260 | PA5152 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable ATP-binding component of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.583 |
| PA1260 | PA5154 | PA1260 | PA5154 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable permease of ABC transporter; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.748 |
| PA1260 | PA5155 | PA1260 | PA5155 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Amino acid (lysine/arginine/ornithine/histidine/octopine) ABC transporter membrane protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.888 |
| PA1260 | aotP | PA1260 | PA0892 | Amino acid ABC transporter periplasmic binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Arginine/ornithine transport protein AotP; Part of the arginine-inducible binding-protein-dependent transport system for arginine and ornithine. Probably responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. | 0.704 |
| PA1339 | PA0314 | PA1339 | PA0314 | Amino acid ABC transporter ATP binding protein; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | L-cysteine transporter of ABC system FliY; Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene; Belongs to the bacterial solute-binding protein 3 family. | 0.790 |
page 1 of 4