Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA5194 | PA5195 | PA5194 | PA5195 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 0.884 |
| PA5194 | yrfI | PA5194 | PA5193 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Heat shock protein HSP33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress. | 0.782 |
| PA5195 | PA5194 | PA5195 | PA5194 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.884 |
| PA5195 | rplQ | PA5195 | PA4237 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.845 |
| PA5195 | rplS | PA5195 | PA3742 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.882 |
| PA5195 | rplT | PA5195 | PA2741 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.810 |
| PA5195 | rplW | PA5195 | PA4261 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.827 |
| PA5195 | rplX | PA5195 | PA4252 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.831 |
| PA5195 | rpmB | PA5195 | PA5316 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L28; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the bacterial ribosomal protein bL28 family. | 0.860 |
| PA5195 | rpmD | PA5195 | PA4245 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L30; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.830 |
| PA5195 | rpmH | PA5195 | PA5570 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 50S ribosomal protein L34; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the bacterial ribosomal protein bL34 family. | 0.831 |
| PA5195 | yrfI | PA5195 | PA5193 | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | Heat shock protein HSP33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress. | 0.942 |
| rplQ | PA5195 | PA4237 | PA5195 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable heat shock protein; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene); Belongs to the HSP15 family. | 0.845 |
| rplQ | rplS | PA4237 | PA3742 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| rplQ | rplT | PA4237 | PA2741 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
| rplQ | rplW | PA4237 | PA4261 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| rplQ | rplX | PA4237 | PA4252 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| rplQ | rpmB | PA4237 | PA5316 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L28; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the bacterial ribosomal protein bL28 family. | 0.998 |
| rplQ | rpmD | PA4237 | PA4245 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L30; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.999 |
| rplQ | rpmH | PA4237 | PA5570 | 50S ribosomal protein L17; Product name confidence: Class 2 (High similarity to functionally studied protein). | 50S ribosomal protein L34; Product name confidence: Class 2 (High similarity to functionally studied protein); Belongs to the bacterial ribosomal protein bL34 family. | 0.990 |
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