Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0810 | pchP | PA0810 | PA5292 | Probable haloacid dehalogenase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Phosphorylcholine phosphatase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.899 |
| PA3236 | PA5396 | PA3236 | PA5396 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.865 |
| PA3236 | dgcA | PA3236 | PA5398 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.863 |
| PA3236 | gbcA | PA3236 | PA5410 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | GbcA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.884 |
| PA3236 | gbdR | PA3236 | PA5380 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | GbdR; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.590 |
| PA3236 | pchP | PA3236 | PA5292 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Phosphorylcholine phosphatase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.866 |
| PA3236 | purU2 | PA3236 | PA5420 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.859 |
| PA3236 | soxD | PA3236 | PA5417 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sarcosine oxidase delta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.866 |
| PA3236 | soxG | PA3236 | PA5419 | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sarcosine oxidase gamma subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.855 |
| PA5396 | PA3236 | PA5396 | PA3236 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.865 |
| PA5396 | dgcA | PA5396 | PA5398 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.975 |
| PA5396 | gbcA | PA5396 | PA5410 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbcA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.937 |
| PA5396 | gbdR | PA5396 | PA5380 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbdR; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.712 |
| PA5396 | pchP | PA5396 | PA5292 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Phosphorylcholine phosphatase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.861 |
| PA5396 | purU2 | PA5396 | PA5420 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.861 |
| PA5396 | soxD | PA5396 | PA5417 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase delta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.952 |
| PA5396 | soxG | PA5396 | PA5419 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase gamma subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.958 |
| dgcA | PA3236 | PA5398 | PA3236 | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable glycine betaine-binding protein precursor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.863 |
| dgcA | PA5396 | PA5398 | PA5396 | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.975 |
| dgcA | gbcA | PA5398 | PA5410 | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | GbcA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.988 |
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