Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA0599 | PA5364 | PA0599 | PA5364 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable two-component response regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.751 |
| PA0599 | fleS | PA0599 | PA1098 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Two-component sensor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.721 |
| PA0930 | PA1243 | PA0930 | PA1243 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.587 |
| PA0930 | PA2177 | PA0930 | PA2177 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.433 |
| PA0930 | PA5364 | PA0930 | PA5364 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Probable two-component response regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.777 |
| PA0930 | ercS-2 | PA0930 | PA1992 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.466 |
| PA0930 | fleS | PA0930 | PA1098 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Two-component sensor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.545 |
| PA0930 | gacS | PA0930 | PA0928 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.746 |
| PA0930 | pfeS | PA0930 | PA2687 | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | Two-component sensor PfeS; Member of the two-component regulatory system PfeR/PfeS. May activate PfeR by phosphorylation. | 0.911 |
| PA1158 | PA1243 | PA1158 | PA1243 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.500 |
| PA1158 | PA5364 | PA1158 | PA5364 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable two-component response regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.774 |
| PA1158 | ercS-2 | PA1158 | PA1992 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.433 |
| PA1158 | gacS | PA1158 | PA0928 | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.492 |
| PA1243 | PA0930 | PA1243 | PA0930 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Two-component sensor; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.587 |
| PA1243 | PA1158 | PA1243 | PA1158 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable two-component sensor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.500 |
| PA1243 | PA2177 | PA1243 | PA2177 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.960 |
| PA1243 | PA5364 | PA1243 | PA5364 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Probable two-component response regulator; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.881 |
| PA1243 | ercS-2 | PA1243 | PA1992 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | ErcS; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.961 |
| PA1243 | fleS | PA1243 | PA1098 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Two-component sensor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.414 |
| PA1243 | gacS | PA1243 | PA0928 | Probable sensor/response regulator hybrid; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Sensor/response regulator hybrid; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.962 |
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