Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA5396 | PA5397 | PA5396 | PA5397 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.993 |
| PA5396 | dgcA | PA5396 | PA5398 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.975 |
| PA5396 | gbcA | PA5396 | PA5410 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbcA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.937 |
| PA5396 | gbcB | PA5396 | PA5411 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbcB; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.912 |
| PA5396 | purU2 | PA5396 | PA5420 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.861 |
| PA5396 | soxA | PA5396 | PA5418 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase alpha subunit; Class 1: Function experimentally demonstrated in P. aeruginosa; Belongs to the GcvT family. | 0.819 |
| PA5396 | soxB | PA5396 | PA5416 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase beta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.942 |
| PA5396 | soxD | PA5396 | PA5417 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase delta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.952 |
| PA5396 | soxG | PA5396 | PA5419 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase gamma subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.958 |
| PA5397 | PA5396 | PA5397 | PA5396 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.993 |
| PA5397 | dgcA | PA5397 | PA5398 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.992 |
| PA5397 | gbcA | PA5397 | PA5410 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbcA; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.987 |
| PA5397 | gbcB | PA5397 | PA5411 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | GbcB; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.959 |
| PA5397 | glyA1 | PA5397 | PA5415 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.463 |
| PA5397 | purU2 | PA5397 | PA5420 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.875 |
| PA5397 | soxA | PA5397 | PA5418 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase alpha subunit; Class 1: Function experimentally demonstrated in P. aeruginosa; Belongs to the GcvT family. | 0.917 |
| PA5397 | soxB | PA5397 | PA5416 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase beta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.947 |
| PA5397 | soxD | PA5397 | PA5417 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase delta subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.964 |
| PA5397 | soxG | PA5397 | PA5419 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Sarcosine oxidase gamma subunit; Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.967 |
| dgcA | PA5396 | PA5398 | PA5396 | DgcA, Dimethylglycine catabolism; Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.975 |
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