Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA5470 | PA5471 | PA5470 | PA5471 | Probable peptide chain release factor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.998 |
| PA5470 | PA5471.1 | PA5470 | PA5471.1 | Probable peptide chain release factor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.438 |
| PA5471 | PA5470 | PA5471 | PA5470 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable peptide chain release factor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.998 |
| PA5471 | PA5471.1 | PA5471 | PA5471.1 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.438 |
| PA5471 | PA5472 | PA5471 | PA5472 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.916 |
| PA5471.1 | PA5470 | PA5471.1 | PA5470 | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Probable peptide chain release factor; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.438 |
| PA5471.1 | PA5471 | PA5471.1 | PA5471 | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.438 |
| PA5471.1 | PA5472 | PA5471.1 | PA5472 | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.511 |
| PA5471.1 | pmbA | PA5471.1 | PA4472 | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | PmbA protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | 0.416 |
| PA5471.1 | trpI | PA5471.1 | PA0037 | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | Transcriptional regulator TrpI; Activates the expression of the trpBA genes, which encode the two tryptophan synthase subunits, and represses initiation at its own promoter. Acts by binding to two adjacent sites in the intergenic region. In the absence of the inducer indoleglycerol phosphate (InGP), TrpI binds to site I. In the presence of InGP, TrpI binds to site I and site II. Binding to site II is site I dependent. InGP strongly stimulates binding to site II and is required for maximal activation of trpBA. Belongs to the LysR transcriptional regulatory family. | 0.589 |
| PA5472 | PA5471 | PA5472 | PA5471 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.916 |
| PA5472 | PA5471.1 | PA5472 | PA5471.1 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.511 |
| pmbA | PA5471.1 | PA4472 | PA5471.1 | PmbA protein; Product name confidence: Class 2 (High similarity to functionally studied protein). | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.416 |
| trpI | PA5471.1 | PA0037 | PA5471.1 | Transcriptional regulator TrpI; Activates the expression of the trpBA genes, which encode the two tryptophan synthase subunits, and represses initiation at its own promoter. Acts by binding to two adjacent sites in the intergenic region. In the absence of the inducer indoleglycerol phosphate (InGP), TrpI binds to site I. In the presence of InGP, TrpI binds to site I and site II. Binding to site II is site I dependent. InGP strongly stimulates binding to site II and is required for maximal activation of trpBA. Belongs to the LysR transcriptional regulatory family. | Leader peptide; Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. | 0.589 |