Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Slin_0704 | Slin_0705 | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase. | 0.624 |
Slin_0704 | Slin_0706 | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_2516 hypothetical protein. | 0.463 |
Slin_0704 | Slin_4003 | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | PFAM: Protein of unknown function DUF1810; KEGG: mrd:Mrad2831_3610 hypothetical protein. | 0.472 |
Slin_0705 | Slin_0704 | PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase. | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | 0.624 |
Slin_0705 | Slin_0706 | PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase. | PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_2516 hypothetical protein. | 0.616 |
Slin_0706 | Slin_0704 | PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_2516 hypothetical protein. | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | 0.463 |
Slin_0706 | Slin_0705 | PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_2516 hypothetical protein. | PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase. | 0.616 |
Slin_4003 | Slin_0704 | PFAM: Protein of unknown function DUF1810; KEGG: mrd:Mrad2831_3610 hypothetical protein. | PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. | 0.472 |