STRINGSTRING
PFL_0023 PFL_0023 pilQ pilQ pilO_2 pilO_2 pilN pilN pilM pilM pilP_1 pilP_1 PFL_1224 PFL_1224 PFL_2004 PFL_2004 PFL_3929 PFL_3929 trpS trpS PFL_1997 PFL_1997
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_0023Conserved hypothetical protein. (336 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
 
 
 0.947
pilO_2
Type IV pilus biogenesis protein PilO; Identified by similarity to GB:AAA87404.1; match to protein family HMM PF04350.
 
 
   0.900
pilN
Type IV pilus biogenesis protein PilN; Identified by similarity to GB:AAA87403.1; match to protein family HMM PF05137; match to protein family HMM TIGR01409.
  
 
   0.899
pilM
Type IV pilus biogenesis protein PilM; See Martin et. al. 1995 (PMID: 7565110) for characterization in PAO1; identified by similarity to GB:AAG08429.1; match to protein family HMM TIGR01175.
  
 
   0.897
pilP_1
Type IV pilus biogenesis protein PilP; Identified by similarity to GB:AAG08426.1; match to protein family HMM PF04351.
 
 
   0.853
PFL_1224
Identified by match to protein family HMM PF04865.
  
 
 0.799
PFL_2004
Hypothetical protein; Identified by glimmer; putative.
  
   0.782
PFL_3929
Conserved hypothetical protein.
 
   0.780
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.756
PFL_1997
Conserved hypothetical protein.
  
 
 0.750
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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