STRINGSTRING
PFL_0040 PFL_0040 PFL_4596 PFL_4596 PFL_0039 PFL_0039 PFL_0041 PFL_0041 PFL_5285 PFL_5285 PFL_2569 PFL_2569 PFL_4231 PFL_4231 PFL_0612 PFL_0612 PFL_0613 PFL_0613 wbpL wbpL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0040Conserved hypothetical protein; Identified by match to protein family HMM PF07311. (71 aa)    
Predicted Functional Partners:
PFL_4596
Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
   
    0.609
PFL_0039
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
  
    0.604
PFL_0041
Conserved hypothetical protein; Identified by match to protein family HMM PF06649.
  
    0.545
PFL_5285
Conserved hypothetical protein; Identified by match to protein family HMM PF05359.
  
    0.514
PFL_2569
Conserved hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.506
PFL_4231
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
   
    0.485
PFL_0612
Identified by match to protein family HMM PF05170.
   
    0.476
PFL_0613
Identified by match to protein family HMM PF00210; match to protein family HMM PF02915.
   
    0.476
wbpL
Glycosyltransferase WbpL; Identified by similarity to GB:AAG06533.1; match to protein family HMM PF00953.
  
    0.421
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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