STRINGSTRING
PFL_0041 PFL_0041 PFL_0039 PFL_0039 algG algG algK algK algZ algZ PFL_0040 PFL_0040 algX algX PFL_6256 PFL_6256 PFL_2329 PFL_2329 PFL_4397 PFL_4397 algL algL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_0041Conserved hypothetical protein; Identified by match to protein family HMM PF06649. (74 aa)    
Predicted Functional Partners:
PFL_0039
Conserved hypothetical protein; Identified by match to protein family HMM PF05957.
 
    0.708
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.645
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.634
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
     0.581
PFL_0040
Conserved hypothetical protein; Identified by match to protein family HMM PF07311.
  
    0.545
algX
Alginate biosynthesis protein AlgX; Identified by similarity to GB:AAA91126.1.
  
     0.540
PFL_6256
Arc-like DNA binding domain protein; Identified by match to protein family HMM PF03869.
  
     0.513
PFL_2329
Sulfatase domain protein; Identified by match to protein family HMM PF00884.
  
     0.478
PFL_4397
Conserved hypothetical protein.
  
     0.476
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
     0.462
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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