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ctaG ctaG PFL_0068 PFL_0068 cyoE_2 cyoE_2 cyoE_1 cyoE_1 ctaC ctaC ctaE ctaE PFL_0066 PFL_0066 ctaD ctaD PFL_0067 PFL_0067 PFL_0318 PFL_0318 PFL_0070 PFL_0070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ctaGPutative cytochrome c oxidase assembly protein; Identified by similarity to SP:P56940; match to protein family HMM PF04442. (185 aa)    
Predicted Functional Partners:
PFL_0068
Putative cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
 0.992
cyoE_2
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.990
cyoE_1
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
 0.977
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.972
ctaE
Cytochrome c oxidase, subunit III; Identified by similarity to SP:P06030; match to protein family HMM PF00510.
 
  
 0.963
PFL_0066
Conserved hypothetical protein.
 
 
 0.963
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
 0.905
PFL_0067
Conserved hypothetical protein.
 
 
 0.870
PFL_0318
Cytochrome c2; Identified by similarity to SP:P00083; match to protein family HMM PF00034.
  
 
 0.724
PFL_0070
Identified by match to protein family HMM PF02630.
 
 
 0.723
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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