STRINGSTRING
PFL_0065 PFL_0065 PFL_0067 PFL_0067 PFL_0068 PFL_0068 PFL_0066 PFL_0066 PFL_5089 PFL_5089 cyoE_2 cyoE_2 PFL_6265 PFL_6265 PFL_1973 PFL_1973 PFL_3663 PFL_3663 pasA pasA PFL_5135 PFL_5135
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0065Conserved hypothetical protein. (67 aa)    
Predicted Functional Partners:
PFL_0067
Conserved hypothetical protein.
 
     0.851
PFL_0068
Putative cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
    0.745
PFL_0066
Conserved hypothetical protein.
 
     0.744
PFL_5089
Conserved hypothetical protein; Identified by match to protein family HMM PF06295.
  
     0.701
cyoE_2
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.629
PFL_6265
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02449.
  
     0.594
PFL_1973
Putative anti-anti-sigma factor; Identified by match to protein family HMM PF01740.
  
     0.590
PFL_3663
Conserved hypothetical protein.
  
     0.527
pasA
PasA protein; Identified by similarity to GB:AAZ03608.1.
  
     0.524
PFL_5135
Conserved hypothetical protein.
  
     0.523
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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