STRINGSTRING
PFL_0067 PFL_0067 PFL_0068 PFL_0068 PFL_0066 PFL_0066 cyoE_2 cyoE_2 ctaC ctaC ctaG ctaG PFL_0065 PFL_0065 PFL_0070 PFL_0070 ctaE ctaE PFL_3663 PFL_3663 algK algK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0067Conserved hypothetical protein. (166 aa)    
Predicted Functional Partners:
PFL_0068
Putative cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
 
 
 0.975
PFL_0066
Conserved hypothetical protein.
 
  
 0.959
cyoE_2
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.925
ctaC
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.923
ctaG
Putative cytochrome c oxidase assembly protein; Identified by similarity to SP:P56940; match to protein family HMM PF04442.
 
 
 0.870
PFL_0065
Conserved hypothetical protein.
 
     0.851
PFL_0070
Identified by match to protein family HMM PF02630.
 
     0.815
ctaE
Cytochrome c oxidase, subunit III; Identified by similarity to SP:P06030; match to protein family HMM PF00510.
 
  
 0.744
PFL_3663
Conserved hypothetical protein.
 
    0.720
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
 
   0.709
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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