STRINGSTRING
PFL_0081 PFL_0081 thrB thrB PFL_2904 PFL_2904 PFL_4016 PFL_4016 PFL_4017 PFL_4017 PFL_4542 PFL_4542 polA polA PFL_1163 PFL_1163 PFL_1578 PFL_1578 PFL_4486 PFL_4486 mvaT mvaT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0081Conserved hypothetical protein. (95 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; Belongs to the pseudomonas-type ThrB family.
 
    0.808
PFL_2904
Conserved hypothetical protein.
  
    0.674
PFL_4016
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
  
    0.674
PFL_4017
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
  
    0.674
PFL_4542
Peptidase propeptide and YpeB domain protein; Identified by match to protein family HMM PF03413.
  
    0.674
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.669
PFL_1163
Conserved hypothetical protein.
  
     0.633
PFL_1578
Identified by match to protein family HMM TIGR02292; Belongs to the UPF0149 family.
  
     0.572
PFL_4486
Type IV pilus assembly protein, PilZ family; Identified by match to protein family HMM PF07238.
  
     0.522
mvaT
Transcriptional regulator MvaT; Identified by similarity to GB:AAX18928.1.
  
    0.452
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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