STRINGSTRING
PFL_0104 PFL_0104 citN citN PFL_0103 PFL_0103
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0104Membrane protein, TerC family; Identified by match to protein family HMM PF03741. (255 aa)    
Predicted Functional Partners:
citN
Citrate transporter; Identified by similarity to SP:P42308; match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM TIGR00784.
  
  
 0.732
PFL_0103
Na/Pi-cotransporter II-like protein; Identified by similarity to SP:P0AF44; match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013.
  
    0.493
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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